species:   Scscl
pid:       PID1614
parent:    Ssc-milR-90
paralog:   
locus:     NW_001820821.1:1030406-1030485
matures:   ['UCAGAGUACGAAGGUCUAUAUA', 'UAUAGAGCUUCGUGCUUAA']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820821.1:1030406-1030485

3 out of bounds
17 alignments
1 proper strand
1 stranded perfect matches

        **************************              ***********************         
GAUCGAACUUUCAGAGUACGAAGGUCUAUAUAAUCGUGAUGGAUUUCCUUUGUAUAGAGCUUCGUGCUUAAGAUCAAUCA
(((.((.(((...((((((((((.(((((((((..(.((......))).))))))))).))))))))))))).)).))).
----------UCAGAGUACGAAGGUCUAUAUA------------------------------------------------ l=22 a=0 c
----------------------------------------------------UAUAGAGCUUCGUGCUUAA--------- l=19 a=0 c*
--------------------------------------------------UGUAUAGAGCUUCGUGCUUAA--------- l=21 a=1 ma
----------UCAGAGUACGAAGGUCUAUAUAAU---------------------------------------------- l=24 a=0 ma*

--------------------------------------------------UGUAUAGAGCUUCGUGCUUAA--------- l=21 a=1 (ma)

mb-00011
ax-1011011
ku-01
ss-110111011100
fn-101
